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Dependencies
- beautifulsoup4 >=4.8.0
- chromadb <0.6.0,>=0.5.0
- click <9.0.0,>=8.1.7
- click-default-group <2.0.0,>=1.2.4
- defusedxml <0.8.0,>=0.7.1
- duckdb <1.1.0,>=1.0.0
- eutils <0.7.0,>=0.6.0
- google-api-python-client <3.0.0,>=2.97.0
- google-auth-oauthlib <2.0.0,>=1.0.0
- google-search-results >=2.4.2
- gspread <6.0.0,>=5.10.0
- httpx <0.25.0,>=0.24.1
- importlib-metadata >=6
- inflection >=0.5.1
- jsonlines
- jsonpatch <2.0,>=1.33
- jsonpath-ng <2.0.0,>=1.5.3
- linkml-runtime <2.0.0,>=1.6.3
- llm <0.16,>=0.15
- matplotlib <4.0.0,>=3.7.2
- oaklib <0.7.0,>=0.6.9
- onnxruntime <=1.19.2
- openai >=0.27.7
- pygithub <2.0.0,>=1.59.1
- pymongo >=4.4.1
- python-dotenv <2.0.0,>=1.0.1
- python-ulid <2.0.0,>=1.1.0
- pytrials <0.4.0,>=0.3.0
- ratelimiter <2.0.0,>=1.2.0.post0
- requests-cache <2.0.0,>=1.1.0
- scholarly <2.0.0,>=1.7.11
- seaborn <0.13.0,>=0.12.2
- sentence-transformers >=2.2.2
- sqlite-utils <4.0,>=3.34
- streamlit >=1.22.0
- textract ==1.5.0
- tiktoken <0.8.0,>=0.7.0
- venomx <0.2.0,>=0.1.1
- wikipedia >=1.4.0
- xmltodict <0.14.0,>=0.13.0
5 optional dependencies
- bioc[bioc]
- gpt4all[gpt4all]
- langchain-community[paperqa]
- llm-gpt4all[gpt4all]
- paper-qa[paperqa]