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Dependencies
- adjusttext >=1.3
- anndata >=0.12.0rc3
- decoupler >=2
- gseapy >=1.1.9
- jax >=0.5.3
- marsilea >=0.5.3
- numpy >=2.0.2
- pandas >=2.2.3
- pydeseq2 >=0.5
- pynndescent >=0.5
- rich >=14
- scanpy >=1.11.2
- scikit-learn >=1.5.1
- scipy <1.16,>=1.15.3
- session-info2 >=0.1.2
- statsmodels >=0.14.4
- tqdm >=4.67.1
30 optional dependencies
- coverage[test]
- docutils[docs]
- furo[docs]
- hatch[test]
- hatch[dev]
- ipykernel[docs]
- ipython[docs]
- jax[docs]
- myst-nb[docs]
- myst-nb[dev]
- pandas[docs]
- pre-commit[dev]
- pytest[test]
- pytest-cov[test]
- pytest-mock[test]
- scvi-tools[docs]
- setuptools[docs]
- sphinx[docs]
- sphinx-autodoc-typehints[docs]
- sphinx-book-theme[docs]
- sphinxcontrib-bibtex[docs]
- sphinx-copybutton[docs]
- sphinx-design[docs]
- sphinxext-opengraph[docs]
- sphinx-tippy[docs]
- statsmodels[docs]
- tox[docs]
- tox[dev]
- twine[dev]
- twine[docs]