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Dependencies
- accelerate
- biopython ==1.86
- blue-crab ==0.4.0
- cython ==0.29.21
- deap ==1.4.1
- debugpy ==1.8.8
- dtaidistance ==2.3.11
- edlib ==1.3.9
- fast-ctc-decode ==0.3.5
- fitter ==1.7.1
- flashlight ==0.1.1
- flashlight-text ==0.0.7
- hyperopt
- igv ==0.9.6
- kenlm ==0.3.0
- lhotse
- mappy ==2.24
- matplotlib
- memory-efficient-attention-pytorch ==0.1.6
- muon-optimizer ==0.1.0
- nltk ==3.9.1
- numpy ==1.23.5
- onnx2torch ==1.5.14
- onnxconverter-common ==1.14.0
- onnxmltools ==1.12.0
- onnxruntime-gpu ==1.22.0
- onnxscript ==0.5.1
- onnx-simplifier ==0.4.36
- ont-bonito ==1.0.0
- ont-fast5-api ==4.1.3
- ont-koi ==0.6.5
- ont-remora ==3.3.0
- pandas ==1.5.3
- parasail ==1.3.4
- patchworklib ==0.6.5
- pyabf
- pysam ==0.21.0
- pyslow5 ==1.3.1
- python-dateutil ==2.8.2
- pytorch-crf ==0.7.2
- pytorch-ranger ==0.1.1
- requests ~=2.32.2
- rotary-embedding-torch ==0.8.3
- ruptures ==1.1.9
- scipy ==1.14.1
- seaborn
- setuptools ==67.6.1
- statsmodels
- tabulate ==0.9.0
- tensorboard
- toml ==0.10.2
- torch ==2.9.1
- torchaudio ==2.9.1
- torch-pruning ==1.3.7
- torchvision ==0.24.1
- tqdm <5,>4
- transformers
- tslearn ==0.6.3
- uncalled4