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Dependencies
- anndata >=0.8
- bioframe >=0.4
- biopython
- captum ==0.5.0
- enformer-pytorch
- genomepy
- huggingface-hub
- importlib-metadata
- importlib-resources
- ledidi
- logomaker >=0.8
- matplotlib
- memelite
- modisco-lite >=2.4.0
- numpy
- pandas
- plotnine >=0.8
- pybigwig
- pygenomeviz <=0.4.4
- pyjaspar >=3.0
- pytorch-lightning >=2.0
- scikit-learn
- seaborn
- statsmodels >=0.11.1
- tangermeme >=0.5.0
- torch >=2.0
- torchmetrics >=1.1
- wandb >=0.14
3 optional dependencies
- pytest[testing]
- pytest-cov[testing]
- setuptools[testing]