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Dependencies
- alifedata-phyloinformatics-convert >=0.17.0
- anytree >=2.8.0
- astropy >=5.3.4
- bitarray >=2.6.2
- bitstring >=3.1.9
- dendropy >=4.5.2
- deprecated >=1.2.13
- downstream >=1.21.10
- fishersrc >=0.1.15
- interval-search >=0.3.1
- iterpop >=0.3.4
- joblib >=1.0.0
- joinem >=0.9.2
- keyname >=0.6.0
- lazy-loader >=0.4
- lru-dict >=1.1.7
- matplotlib >=3.5.2
- mmh3 >=3.0.0
- more-itertools >=8.13.0
- mpmath >=1.1.0
- networkx >=2.6.3
- numpy >=2
- opytional >=0.1.0
- ordered-set >=4.1.0
- packaging >=23.0
- pandas <3,>=2
- pandera >=0.21.0
- phyloframe >=0.2.0
- polars !=1.37.*,!=1.39.*,>=1.10.0
- prettytable >=3.5.0
- pyarrow >=16.0.0
- python-slugify >=6.1.2
- safe-assert >=0.2.0
- scikit-learn >=0.17
- seaborn >=0.11.0
- sortedcontainers >=2.4.0
- statsmodels >=0.14.4
- tqdm >=4.62.3
- typing-extensions >=4.7.1
40 optional dependencies
- biopython[testing]
- biopython[phylo-extra]
- black[testing]
- bumpver[release]
- colorclade[testing]
- contexttimer[testing]
- coverage[testing]
- cppimport[jit]
- flake8[testing]
- ipykernel[docs]
- ipython[docs]
- isort[testing]
- iterify[testing]
- more-itertools[testing]
- mypy[testing]
- nbsphinx[docs]
- numba[jit]
- phylotrackpy[testing]
- phylotrackpy[phylo-extra]
- pybind11[release]
- pybind11[docs]
- pytest[testing]
- pytest-xdist[testing]
- pyyaml[testing]
- pyyaml[docs]
- ruff[testing]
- safe-assert[testing]
- scipy[testing]
- setuptools[release]
- setuptools[testing]
- setuptools[jit]
- setuptools-scm[release]
- sphinx[docs]
- sphinx-rtd-theme[docs]
- teeplot[testing]
- tox[testing]
- tqdist[testing]
- twine[release]
- uv[release]
- wheel[release]