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Dependencies
- airr >=1.5.1
- bionumpy >=1.0.12
- dill >=0.3
- editdistance
- kaleido
- logomaker
- matplotlib >=3.1
- matplotlib-venn >=0.11
- numpy <=1.26.4
- olga >=1.2.4
- pandas >=2.1.0
- plotly >=4
- psutil
- pystache
- python-glmnet
- pyyaml >=5.3
- regex
- scikit-learn >=0.23
- scipy <=1.12.0
- setuptools <70
- tzlocal
- umap-learn
40 optional dependencies
- accelerate[all]
- accelerate[gen-models]
- datasets[gen-models]
- datasets[all]
- esm[embeddings]
- fisher[all]
- fisher[fisher]
- fishersapi[fisher]
- fishersapi[all]
- gensim[dl]
- gensim[word2vec]
- gensim[all]
- httpx[all]
- httpx[embeddings]
- imgtgenedl[all]
- imgtgenedl[ligo]
- keras[all]
- keras[dl]
- logomaker[dl]
- logomaker[all]
- sentencepiece[all]
- sentencepiece[embeddings]
- sonnia[all]
- sonnia[gen-models]
- stitchr[all]
- stitchr[ligo]
- tcrdist3[all]
- tcrdist3[tcrdist]
- tensorflow[gen-models]
- tensorflow[dl]
- tensorflow[all]
- tokenizers[gen-models]
- tokenizers[all]
- torch[embeddings]
- torch[gen-models]
- torch[all]
- torch[dl]
- transformers[gen-models]
- transformers[embeddings]
- transformers[all]