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Dependencies
- adjusttext >=0.8
- anndata <0.12.0
- datetime >=4.5
- igraph >=0.10
- ipywidgets >=8.0
- joblib >=1.2
- marsilea
- matplotlib >3.6
- multiprocess >=0.70
- networkx >=2.8
- numba >=0.56
- numpy >=1.23
- omicverse-notebook >=0.1.4
- omicverse-skills >=0.2.0
- openai >=1.0
- pandas <3.0.0,>=1.5
- plotly
- requests >=2.0
- scanpy >=1.9
- scikit-image >=0.21
- scikit-learn >=1.2
- scikit-misc >=0.1
- scipy >=1.8
- seaborn >=0.11
- statsmodels >=0.13
- tqdm >=4.64
- transformers >=0.30
- zarr <3.0.0
64 optional dependencies
- anndata[easy]
- anndataoom[rust]
- arviz[full]
- beautifulsoup4[skillseeker]
- boltons[full]
- cytoolz[full]
- discord-py[tests]
- discord-py[jarvis]
- dynamo-release[full]
- einops[easy]
- einops[full]
- ete3[tests]
- ete3[full]
- frozendict[full]
- gdown[full]
- graphtools[easy]
- graphtools[full]
- httpx[jarvis]
- httpx[tests]
- ktplotspy[easy]
- ktplotspy[full]
- leidenalg[full]
- lifelines[full]
- lifelines[easy]
- mcp[mcp]
- memento-de[full]
- metatime[easy]
- metatime[full]
- mofax[easy]
- mofax[full]
- nbformat[jarvis]
- nbformat[tests]
- numpy[easy]
- omicclaw[web]
- pandas[easy]
- pertpy[full]
- pillow[full]
- pillow[easy]
- pillow[tests]
- pillow[jarvis]
- pydeseq2[full]
- pydeseq2[easy]
- pydeseq2[tests]
- pygam[full]
- pygithub[skillseeker]
- pymupdf[skillseeker]
- pytest[tests]
- pytest-asyncio[tests]
- python-telegram-bot[jarvis]
- python-telegram-bot[tests]
- requests[jarvis]
- requests[tests]
- s3fs[full]
- scikit-bio[tests]
- scvi-tools[full]
- squidpy[full]
- tangram-sc[full]
- tensorboard[full]
- tensorboard[easy]
- tomli[easy]
- tomli[full]
- torchdr[full]
- toytree[full]
- wandb[full]