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Dependencies
- anndata >=0.10
- leidenalg >=0.9
- matplotlib >=3.7
- numpy >=1.23
- opencv-python >=4.8
- pandas >=1.5
- pillow >=9.4
- pot >=0.9
- python-igraph >=0.10
- qpsolvers >=4.0
- ray >=2.7
- requests >=2.31
- scanpy >=1.9
- scikit-image >=0.22
- scikit-learn >=1.2
- scipy >=1.9
- tqdm >=4.65
27 optional dependencies
- einops[all]
- einops[cellvit]
- gseapy[all]
- gseapy[microenv]
- gurobipy[all]
- gurobipy[annotation]
- lightning[all]
- lightning[annotation]
- pyro-ppl[annotation]
- pyro-ppl[all]
- pyscipopt[annotation]
- pyscipopt[all]
- pytorch-lightning[annotation]
- pytorch-lightning[all]
- scvi-tools[annotation]
- scvi-tools[all]
- shapely[all]
- shapely[cellvit]
- statsmodels[microenv]
- statsmodels[all]
- torch[annotation]
- torch[all]
- torch[cellvit]
- torchvision[cellvit]
- torchvision[all]
- transformers[all]
- transformers[annotation]