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Dependencies
- adjusttext >=1.1.1
- altair >=5.3.0
- anndata >=0.10.5
- anyio >=4.3.0
- appdirs >=1.4.4
- arviz >=0.17.1
- astropy >=6.1.2
- beartype >=0.18.5
- chex >=0.1.7
- click >=8.1.7
- colorlog >=6.7.0
- daft >=0.1.2
- diffrax >=0.5.0
- dill >=0.3.8
- diskcache >=5.6.1
- duckdb >=1.0.0
- einops >=0.7.0
- expression >=5.0.2
- flax >=0.8.1
- frozenlist >=1.1.1
- fsspec >=2024.3.0
- greenlet >=3.0.3
- h5py >=3.9.0
- httpx >=0.27.0
- ibis-framework >=9.2.0
- jax >=0.4.23
- jaxlib >=0.4.23
- jaxtyping >=0.2.25
- leidenalg >=0.9.1
- lightning >=2.0.0
- llvmlite >=0.41.1
- matplotlib >=3.9.1
- mlflow >=2.13.0
- numpyro >=0.15.0
- pandas >=2.0.0
- pillow >=10.1.0
- plumbum >=1.8.2
- polars >=0.20.17
- pyarrow >=14.0.2
- pydantic >=2.8.0
- pyro-ppl >=1.9.1
- pytorch-lightning >=2.0.0
- pyyaml >=6.0.1
- returns >=0.23.0
- rich >=13.7.1
- scanpy >=1.10.1
- scikit-learn >=1.3.1
- scipy <1.14.0,>=1.10.1
- scvelo >=0.3.2
- scvi-tools >=1.1.1
- seaborn >=0.13.2
- sparse >=0.15.4
- statsmodels >=0.14.2
- sympy >=1.12
- termcolor >=2.2.0
- tiledb >=0.31.1
- torch >=2.1.2
- torchmetrics >=1.2.1
- trio >=0.26.0
- validators >=0.33.0
- vegafusion >=1.6.9
- vegafusion-python-embed >=1.6.9
- vl-convert-python >=1.6.0
- zstandard >=0.23.0
46 optional dependencies
- black[lint]
- coverage[test]
- dataclasses-json[workflows]
- dulwich[workflows]
- flytekit[workflows]
- furo[docs]
- google-api-python-client[workflows]
- hydra-core[workflows]
- hydra-zen[workflows]
- hypothesis[test]
- ipdb[test]
- ipython[test]
- ipywidgets[workflows]
- jupyter-cache[docs]
- jupyterlab[docs]
- jupytext[docs]
- mashumaro[workflows]
- matplotlib-venn[plotting]
- mypy[lint]
- myst-parser[docs]
- nbconvert[workflows]
- nbformat[workflows]
- nbsphinx[docs]
- omegaconf[workflows]
- papermill[workflows]
- pre-commit[lint]
- pre-commit-hooks[lint]
- pyensembl[bioinformatics]
- pyfaidx[bioinformatics]
- pygments[lint]
- pytest[test]
- pytest-asyncio[test]
- pytest-cov[test]
- pytest-mock[test]
- pytest-xdist[test]
- python-dotenv[workflows]
- quartodoc[docs]
- rich-click[workflows]
- ruff[lint]
- sphinx[docs]
- sphinx-autobuild[docs]
- sphinx-autodoc-typehints[docs]
- sphinx-click[docs]
- sphinx-copybutton[docs]
- sphinx-markdown-builder[docs]
- xdoctest[test]