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Dependencies
- adjusttext ==1.3.0
- alphashape ==1.3.1
- biopython >=1.86
- cogent3 >=2026.1.20a1
- ete3 >=3.1.3
- legacy-cgi >=2.6.4
- loguru >=0.7.3
- matplotlib >=3.10.8
- networkx >=3.6.1
- numba >=0.64.0
- numpy ==2.3.5
- pbr >=7.0.3
- polars ==1.39.3
- polars-bio ==0.26.0
- psutil >=7.0.0
- pyyaml >=6.0.3
- requests
- scikit-bio >=0.7.2
- scikit-learn >=1.8.0
- scipy >=1.16.3
- seaborn >=0.13.2
- shapely ==2.1.2
- statsmodels >=0.14.6
- stevedore >=5.6.0
- tinydb ==4.8.2
- tqdm
- umap-learn >=0.5.11