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Dependencies
- anndata >=0.10.0
- dill >=0.3.7
- h5py >=3.10.0
- hnswlib >=0.8.0
- numba >=0.59.0
- numpy >=1.26.0
- packaging >=23.0
- pandas >=2.0.0
- scikit-learn >=1.3.0
- scipy >=1.11.0
- umap-learn >=0.5.0
24 optional dependencies
- harmonypy[all]
- harmonypy[harmony]
- hdbscan[hdbscan]
- hdbscan[all]
- leidenalg[clustering]
- leidenalg[all]
- louvain[all]
- louvain[clustering]
- matplotlib[viz]
- matplotlib[all]
- mypy[dev]
- mypy[all]
- pre-commit[dev]
- pre-commit[all]
- pytest[dev]
- pytest[all]
- pytest-cov[all]
- pytest-cov[dev]
- python-igraph[clustering]
- python-igraph[all]
- ruff[dev]
- ruff[all]
- scanpy[viz]
- scanpy[all]