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Dependencies
- atlas-consortia-clt >=1.0.4
- bioio >=3.2.0
- bioio-bioformats >=1.3.0
- bioio-czi >=2.4.2
- bioio-dv >=1.2.0
- bioio-imageio >=1.3.0
- bioio-lif >=1.4.0
- bioio-nd2 >=1.6.0
- bioio-ome-tiff >=1.4.0
- bioio-ome-zarr >=3.2.1
- bioio-sldy >=1.4.0
- bioio-tifffile >=1.3.0
- cellpose ==4.0.8
- dask >=2024.4
- fsspec >=2024.4
- globus-cli >=3.1.4
- huggingface-hub >=0.23.0
- igraph >=0.11
- jsonschema >=3.2
- leidenalg >=0.10
- matplotlib >=3.8
- numpy <=1.26.4,>=1.23
- onnx >=1.16
- onnxruntime >=1.21.0
- onnxruntime-gpu >=1.21.0
- openpyxl >=3.1
- pandas >=2.0
- pathvalidate >=3.2
- pywavelets >=1.5
- scikit-image <0.25,>=0.22
- scipy >=1.8
- scyjava >=1.12.0
- senoquant-stardist-ext >=0.1.1
- smbprotocol >=1.13
- umap-learn >=0.5
- zarr >=3
37 optional dependencies
- atlas-consortia-clt[all]
- bioio[all]
- bioio-bioformats[all]
- bioio-czi[all]
- bioio-dv[all]
- bioio-imageio[all]
- bioio-lif[all]
- bioio-nd2[all]
- bioio-ome-tiff[all]
- bioio-ome-zarr[all]
- bioio-sldy[all]
- bioio-tifffile[all]
- cellpose[all]
- dask[all]
- fsspec[all]
- globus-cli[all]
- huggingface-hub[all]
- igraph[all]
- jsonschema[all]
- leidenalg[all]
- matplotlib[all]
- napari[all]
- numpy[all]
- onnx[all]
- onnxruntime[all]
- onnxruntime-gpu[all]
- openpyxl[all]
- pandas[all]
- pathvalidate[all]
- pywavelets[all]
- scikit-image[all]
- scipy[all]
- scyjava[all]
- senoquant-stardist-ext[all]
- smbprotocol[all]
- umap-learn[all]
- zarr[all]