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Dependencies
- cellpose ==3.0.11
- concave-hull
- deepcell
- descartes
- flask ==2.0.0
- geopandas
- gitpython
- igraph
- importlib-metadata
- joblib
- leidenalg
- louvain
- matplotlib ==3.9
- networkx
- openslide-python
- pandas
- panel
- pyflowsom
- python-louvain ==0.1
- pyvips
- scanpy
- scikit-image
- scikit-learn
- shapely
- statsmodels
- tensorly
- tissuumaps ==3.1.1.6
- torch <2.6
- tqdm
- watchfiles
- werkzeug ==2.3.8
- yellowbrick
12 optional dependencies
- pytest[testing]
- pytest-cov[testing]
- rapids-singlecell[rapids]
- setuptools[testing]
- torch[stellar]
- torchaudio[stellar]
- torch-cluster[stellar]
- torch-geometric[stellar]
- torch-scatter[stellar]
- torch-sparse[stellar]
- torch-spline-conv[stellar]
- torchvision[stellar]