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Dependencies
- anndata >=0.8.0
- communities >=3.0.0
- datasets >=3.0.1
- networkx >=3.0
- numpy >=1.22.0
- pandas >=2.0.3
- peft >=0.8.2
- pyarrow >=17.0.0
- pytorch-lightning >=1.9.4
- scanpy >=1.10.2
- scikit-learn >=1.3.2
- scipy >=1.10.1
- statsmodels >=0.14.5
- transformers ==4.57.3
- wandb >=0.14.0
5 optional dependencies
- scanpy[numba]
- sim-fish[simulation]
- torch-geometric[numba]
- umap[simulation]
- umap-learn[numba]