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open2c
cooler

A cool place to store your Hi-C

17K 237 60
open2c
pairtools

Extract 3D contacts (.pairs) from sequencing alignments

14K 131 37
XiaoTaoWang
hiclift

Convert genomic coordinates of contact pairs from one assembly to another.

1K 78 5
Tian-Dechao
diffdomain-py3

DiffDomain is a statistically sound method for detecting differential TADs between conditions

405 18 5
XiaoTaoWang
pairliftover

Convert genomic coordinates of contact pairs from one assembly to another.

288 78 5
OluwadareLab
particlechromo3d

A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction

262 3 2
YaqiangCao
cloops2

Loop-calling and peak-calling for sequencing-based interaction data, including related analysis utilities.

156 53 11
cellular-genomics
firecaller

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

121 5 1
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