PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Search Packages

Find Python packages by name, description, GitHub topic, or filter by metrics
msberends
amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

32K 109 22
goodmami
penman

PENMAN notation (e.g. AMR) in Python

17K 150 28
EttoreRocchi
maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

4K 3 1
bjascob
amrlib

A python library that makes AMR parsing, generation and visualization simple.

3K 267 41
EttoreRocchi
respredai

Implementation of the pipeline described in the work "Artificial intelligence model to predict resistances in Gram-negative bloodstream infections" by Bonazzetti et al., npj Digit. Med. 8, 319 (2025)

2K 5 0
chanind
amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

1K 17 2
flipz357
smatchpp

A package for handy processing of semantic graphs such as AMR, with a special focus on standardized evaluation

876 26 4
ufal
perin-parser

PERIN is Permutation-Invariant Semantic Parser developed for MRP 2020

650 45 7
xthua
bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

554 21 7
IBM
transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

539 272 56
EttoreRocchi
maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

433 1 0
EttoreRocchi
maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

418 0 0
pwitab
iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

410 83 23
Danderson123
amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

331 28 2
plandes
zensols-amr

AMR annotation and feature generation

328 2 1
sheng-z
unofficial-stog

AMR Parsing as Sequence-to-Graph Transduction

316 156 36
gpavanb1
splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

314 5 0
gpavanb1
splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

311 2 0
adamdempsey90
ndtamr

N-dimensional adaptive mesh refinement tree structure in Python.

96 18 6
pwitab
iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters, specialy DZG. Former IEC1107

85 83 23
plandes
zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

72 0 0
plandes
zensols-alsum

ALignment SUMmarization

30 0 0
    • Data from PyPI, GitHub, ClickHouse, and BigQuery