Search Packages

amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

penman

PENMAN notation (e.g. AMR) in Python

maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

amrlib

A python library that makes AMR parsing, generation and visualization simple.

respredai

Implementation of the pipeline described in the work "Artificial intelligence model to predict resistances in Gram-negative bloodstream infections" by Bonazzetti et al., npj Digit. Med. 8, 319 (2025)

amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

smatchpp

A package for handy processing of semantic graphs such as AMR, with a special focus on standardized evaluation

perin-parser

PERIN is Permutation-Invariant Semantic Parser developed for MRP 2020

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

zensols-amr

AMR annotation and feature generation

unofficial-stog

AMR Parsing as Sequence-to-Graph Transduction

splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

ndtamr

N-dimensional adaptive mesh refinement tree structure in Python.

iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters, specialy DZG. Former IEC1107

zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

zensols-alsum

ALignment SUMmarization