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macs3-project
macs2

MACS -- Model-based Analysis of ChIP-Seq

27K 774 273
macs3-project
macs3

MACS -- Model-based Analysis of ChIP-Seq

18K 774 273
nolan-h-hamilton
rocco

Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling

6K 9 0
0CBH0
atacfragqc

QC for ATAC-seq fragments

3K 1 0
cantinilab
circe-py

Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.

2K 35 2
CostaLab
rgt

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

2K 113 29
loosolab
tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

977 242 45
ferrocactus
bintogene

A tool for replacing promoter accessibility with a gene activity score.

814 0 0
afrendeiro
ngs-toolkit

A toolkit for NGS analysis with Python

802 14 4
cantinilab
recon

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

544 8 0
Genome-Function-Initiative-Oxford
zen-norm

Zone Equalisation Normalisation: A Python package for bigWig scaling

488 1 0
TheJacksonLaboratory
pybedgraph

A Python package for fast operations on 1-dimensional genomic signal tracks

460 23 2
Boyle-Lab
fseq2

Improving the feature density based peak caller with dynamic statistics

208 7 1
milescsmith
asap-o-matic

Rearrange ASAP-seq antibody reads into something Alevin can recognize and count.

196 0 0
MiraldiLab
maxatac

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

118 29 11
GreenleafLab
nucleoatac

nucleosome calling using ATAC-seq

109 111 34
gtca
chame

Chromatin analysis module

68 4 0
TheFraserLab
cisvar

Calculate both pre and post frequencies for ChIP or ATAC style data

36 6 0
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