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pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

pyani

Application and Python module for average nucleotide identity analyses of microbes.

pyani-plus

pyANI-plus is an application and Python module for whole-genome classification of microbes using Average Nucleotide Identity and similar methods.

orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. (renamed to pyorthoani)

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

btyper3

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.