Search Packages

deeptoolsintervals

A python library for constructing interval trees with associated exon/annotation information

fuc

Frequently used commands in bioinformatics

pygtftk

A python package and a set of shell commands to handle GTF files

bedspec

An HTS-specs compliant BED toolkit

soda-gallery

Python-based UCSC genome browser snapshot-taker and gallery-maker

plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

vcf2variants

Extract coverage information from gVCF and variants from VCF files and output in tabular format.

prooverlap

ProOvErlap - Assessing feature proximity/overlap and testing statistical significance from genomic intervals

pygvcf2coverage

A python tool to extract coverage from gvcf files.