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deeptools
deeptoolsintervals

A python library for constructing interval trees with associated exon/annotation information

9K 6 2
sbslee
fuc

Frequently used commands in bioinformatics

7K 58 8
dputhier
pygtftk

A python package and a set of shell commands to handle GTF files

2K 52 6
clintval
bedspec

An HTS-specs compliant BED toolkit

444 0 0
alexpreynolds
soda-gallery

Python-based UCSC genome browser snapshot-taker and gallery-maker

161 12 3
Computational-Genomics-BSC
plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.

150 3 0
varda
vcf2variants

Extract coverage information from gVCF and variants from VCF files and output in tabular format.

144 4 2
ngualand
prooverlap

ProOvErlap - Assessing feature proximity/overlap and testing statistical significance from genomic intervals

125 1 0
varda
pygvcf2coverage

A python tool to extract coverage from gvcf files.

60 4 2
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