Search Packages

cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

micom

Microbial community modeling based on cobrapy.

molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

ypkpathway

Automatic pathway assembly with the YeastPathwayKit

corda

Genome-scale model construction with CORDA

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

qpcr

A python package to perform analysis of qPCR data

life123

Dynamical modeling of biological systems in 1, 2 and 3D - incl. diffusion, reactions & compartments. A platform for quantitative reactomics (Python, JupyterLab, Plotly)

contact-map

Contact map analysis for biomolecules; based on MDTraj

brendapyrser

A Python parser for the BRENDA database

easymda

Python package for easy analysis of MD simulations based on MDAnalysis.

biosimulators-rbapy

BioSimulators-compliant command-line interface to the RBApy simulation program.

osmolytes

This code attempts to predict the influence of osmolytes on protein stability

helixvis

Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams

mol2scad

A collection of python scripts for chemistry and biochemistry

buffer-app

A collection of python scripts for chemistry and biochemistry

pycontact

PyContact