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opencobra
cobra

COBRApy is a package for constraint-based modeling of metabolic networks.

62K 560 234
micom-dev
micom

Microbial community modeling based on cobrapy.

4K 127 23
bradyajohnston
molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

1K 1K 121
BjornFJohansson
ypkpathway

Automatic pathway assembly with the YeastPathwayKit

901 2 1
cdiener
corda

Genome-scale model construction with CORDA

626 25 8
BeeAnka
efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

607 6 1
NoahHenrikKleinschmidt
qpcr

A python package to perform analysis of qPCR data

568 28 6
BrainAnnex
life123

Dynamical modeling of biological systems in 1, 2 and 3D - incl. diffusion, reactions & compartments. A platform for quantitative reactomics (Python, JupyterLab, Plotly)

501 4 1
dwhswenson
contact-map

Contact map analysis for biomolecules; based on MDTraj

478 48 21
robaina
brendapyrser

A Python parser for the BRENDA database

367 33 10
MolBioMedUAB
easymda

Python package for easy analysis of MD simulations based on MDAnalysis.

311 3 0
biosimulators
biosimulators-rbapy

BioSimulators-compliant command-line interface to the RBApy simulation program.

227 0 0
Electrostatics
osmolytes

This code attempts to predict the influence of osmolytes on protein stability

214 1 4
subramv1
helixvis

Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams

120 6 1
Paradoxdruid
mol2scad

A collection of python scripts for chemistry and biochemistry

91 0 1
Paradoxdruid
buffer-app

A collection of python scripts for chemistry and biochemistry

80 0 1
maxscheurer
pycontact

PyContact

67 68 13
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