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althonos
pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

75K 184 10
MultiQC
multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

34K 1K 662
vanheeringen-lab
genomepy

genes and genomes at your fingertips

21K 412 41
akikuno
dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

6K 14 0
fritzsedlazeck
sniffles

Structural variation caller using third generation sequencing

2K 651 101
mpc-bioinformatics
protgraph

ProtGraph - A Graph-Generator for Proteins

860 13 8
linnabrown
run-dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

463 163 38
gifford-lab
deepaccess

A package for training and interpreting an ensemble of neural networks for chromatin accessibility

263 6 0
urmi-21
pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

247 86 29
MultiQC
multiqc-celescope

Aggregate results from bioinformatics analyses across many samples into a single report.

228 1K 662
ewels
multiqc-msk

Create aggregate bioinformatics analysis reports across many samples and tools

64 1K 656
MultiQC
multiqc-vlad

Aggregate results from bioinformatics analyses across many samples into a single report.

64 1K 662
ewels
multiqc-jupyterlab-helper

Aggregate results from bioinformatics analyses across many samples into a single report.

47 1K 656
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