Search Packages

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

genomepy

genes and genomes at your fingertips

dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

sniffles

Structural variation caller using third generation sequencing

protgraph

ProtGraph - A Graph-Generator for Proteins

run-dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

deepaccess

A package for training and interpreting an ensemble of neural networks for chromatin accessibility

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

multiqc-celescope

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc-msk

Create aggregate bioinformatics analysis reports across many samples and tools

multiqc-vlad

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc-jupyterlab-helper

Aggregate results from bioinformatics analyses across many samples into a single report.