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pybel
pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

16K 138 32
cthoyt
bel-resources

Utilities for BEL resource files.

14K 1 0
bio2bel
bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

3K 21 5
pybel
pybel-tools

A PyBEL extension for analyzing BEL graphs

1K 5 5
bio2bel
bio2bel-hgnc

Hugo Gene Nomenclature Consortium (HGNC) to BEL

964 2 0
bio2bel
bio2bel-wikipathways

Integration of pathway-related information from WikiPathways in BEL

813 3 1
bio2bel
bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

742 13 3
bio2bel
bio2bel-reactome

Integration of pathway-related information from Reactome in BEL

738 5 1
pybel
bel-repository

A utility for loading data from repositories of BEL documents

557 1 0
cthoyt
bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

533 0 0
bio2bel
bio2bel-chebi

A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL

503 1 0
PathwayMerger
pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

398 20 2
pharmacome
hbp-knowledge

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

324 4 7
bio2bel
bio2bel-mirtarbase

A package for converting miRTarBase to BEL

312 0 0
pybel
pybel-cx

A PyBEL extension for interconversion with CX

284 0 0
pybel
pybel-jupyter

A PyBEL extension for Jupyter notebooks

279 2 0
bio2bel
bio2bel-mirbase

A Bio2BEL package for miRBase (http://www.mirbase.org)

271 0 1
bel-enrichment
bel-enrichment

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL

262 7 0
COVID-19-Causal-Reasoning
bel2scm

Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)

257 10 4
bio2bel
bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

223 10 5
bio2bel
bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

194 0 0
bio2bel
bio2bel-uniprot

UniProt Knowledge Base to BEL

153 0 1
pybel
pybel-git

PyBEL Git utilities

144 1 1
bio2bel
bio2bel-expasy

A Bio2BEL package for converting ExPASy to BEL

137 0 0
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