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allenai
scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

55K 2K 251
biocypher
biocypher

A unifying framework for biomedical research knowledge graphs

7K 301 51
raamana
pyradigm

Research data management in biomedical and machine learning applications

3K 30 12
lasigeBioTM
bent

Biomedical Term Annotator

2K 9 1
mims-harvard
optimuskg

A modern multimodal knowledge graph with type-specific metadata across biomedical domains.

2K 16 1
dreji18
bio-epidemiology-ner

Recognize bio-medical entities from a text corpus

1K 133 9
BioDataFuse
pybiodatafuse

Python package for biodatafuse project.

1K 14 12
kyegomez
medpalm

MedPalm - Pytorch

636 432 58
plandes
zensols-mimicsid

MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)

341 4 0
fedbiomed
fedbiomed

A collaborative learning framework for empowering biomedical research

266 81 16
biocontext-ai
skill-to-mcp

Convert AI Skills (Claude Skills format) to MCP server resources

237 24 3
tuttelikz
farabio

Python toolkit for AI-based biomedical image analysis

196 51 3
WiMag-Tracking
pywinding

pywinding - A simulation tool for the design and evaluation of induction microcoils

100 1 1
DandaPanda
refsig

Package for obtaining the referential signal from a set of unipolar iEEG data

87 1 2
plandes
zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

72 0 0
plandes
zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)

35 1 0
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