Search Packages

scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

biocypher

A unifying framework for biomedical research knowledge graphs

pyradigm

Research data management in biomedical and machine learning applications

bent

Biomedical Term Annotator

optimuskg

A modern multimodal knowledge graph with type-specific metadata across biomedical domains.

bio-epidemiology-ner

Recognize bio-medical entities from a text corpus

pybiodatafuse

Python package for biodatafuse project.

medpalm

MedPalm - Pytorch

zensols-mimicsid

MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)

fedbiomed

A collaborative learning framework for empowering biomedical research

skill-to-mcp

Convert AI Skills (Claude Skills format) to MCP server resources

farabio

Python toolkit for AI-based biomedical image analysis

pywinding

pywinding - A simulation tool for the design and evaluation of induction microcoils

refsig

Package for obtaining the referential signal from a set of unipolar iEEG data

zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)