PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Search Packages

Find Python packages by name, description, GitHub topic, or filter by metrics
seung-lab
connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

229K 450 49
seung-lab
fastremap

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

162K 65 9
seung-lab
edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

75K 264 42
seung-lab
dijkstra3d

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

33K 86 14
seung-lab
cloud-volume

Read and write Neuroglancer datasets programmatically.

32K 171 53
seung-lab
kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

29K 201 29
seung-lab
microviewer

Multiplatform 3D numpy image browser based viewer with voxel painting.

18K 16 1
seung-lab
zmesh

Marching Cubes & Mesh Simplification on multi-label 3D images.

16K 72 9
fangq
pmmc

Python bindings for Mesh-based Monte Carlo (MMC) photon transport simulator

13K 54 33
seung-lab
tinybrain

Image pyramid generation for grayscale and segmentation image resize.

8K 11 0
BiaPyX
biapy

Open source Python library for building bioimage analysis pipelines

2K 197 41
Dana-Farber-AIOS
pathml

Tools for computational pathology

1K 451 89
google-research
sofima

Scalable Optical Flow-based Image Montaging and Alignment

808 95 20
ELEKTRONN
elektronn3

Utilities for 3D CNNs in PyTorch

512 171 29
junlabucsd
napari-mm3

Mother machine image analysis through napari

336 10 4
ciroraggio
augmenteddataloader

Medical image augmentation tool that can be integrated with Pytorch & MONAI.

314 4 0
luisvalesilva
wsipre

Handling whole-slide images with region-level annotations.

206 10 5
jvwilliams23
pyssam

A Python library for biomedical statistical shape and appearance modelling.

170 38 2
    • Data from PyPI, GitHub, ClickHouse, and BigQuery