Biophysics Python Packages

mmcif-pdbx

Yet another version of PDBx/mmCIF Python implementation

63K 9 2

pdb2pqr

PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.

60K 167 43

deeptrack

DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

5K 236 61

pycapsid

Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.

3K 10 1

nrefocus

python library for numerical focusing (refocusing, autofocusing) of complex wave fields

3K 10 4

odtbrain

Python library for diffraction tomography with the Born and Rytov approximations

1K 55 13

deerpredict

Software for the prediction of DEER and PRE data from conformational ensembles.

1K 14 4

aims-immune

A software for the analysis of immune repertoires

1K 10 5

proteuspy

A package for the modeling and analysis of proteins of known structure

876 2 0

pyvertexmodel

3D vertex model allowing scutoids

697 3 0

papylio

Single-molecule fluorescence data extraction and analysis.

674 0 3

domb-napari

napari plugin for analyzing the redistribution of fluorescence-labeled proteins

558 1 0

pensa

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

535 149 24

kif

KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.

504 34 4

polaritymodel

Code to investigate a polarity model of organ formation

307 0 0

biskit

A Python platform for Structural Bioinformatics

290 58 23

bimato

A library containing all the biopolymer matrix topology analyses published by the Biological Physics Group, (BIP), Peter Debye Institute, University Leipzig.

281 0 0

old-pdb

This code reads and writes the old Protein Data Bank format.

237 4 1