PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Search Packages

Find Python packages by name, description, GitHub topic, or filter by metrics
Electrostatics
mmcif-pdbx

Yet another version of PDBx/mmCIF Python implementation

63K 9 2
Electrostatics
pdb2pqr

PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.

60K 167 43
DeepTrackAI
deeptrack

DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

5K 236 61
luquelab
pycapsid

Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.

3K 10 1
RI-imaging
nrefocus

python library for numerical focusing (refocusing, autofocusing) of complex wave fields

3K 10 4
RI-imaging
odtbrain

Python library for diffraction tomography with the Born and Rytov approximations

1K 55 13
KULL-Centre
deerpredict

Software for the prediction of DEER and PRE data from conformational ensembles.

1K 14 4
ctboughter
aims-immune

A software for the analysis of immune repertoires

1K 10 5
suchanek
proteuspy

A package for the modeling and analysis of proteins of known structure

876 2 0
Pablo1990
pyvertexmodel

3D vertex model allowing scutoids

697 3 0
Chirlmin-Joo-lab
papylio

Single-molecule fluorescence data extraction and analysis.

674 0 3
wisstock
domb-napari

napari plugin for analyzing the redistribution of fluorescence-labeled proteins

558 1 0
drorlab
pensa

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

535 149 24
kamerlinlab
kif

KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.

504 34 4
jasnyder
polaritymodel

Code to investigate a polarity model of organ formation

307 0 0
graik
biskit

A Python platform for Structural Bioinformatics

290 58 23
tku137
bimato

A library containing all the biopolymer matrix topology analyses published by the Biological Physics Group, (BIP), Peter Debye Institute, University Leipzig.

281 0 0
Electrostatics
old-pdb

This code reads and writes the old Protein Data Bank format.

237 4 1
JohSchoeneberg
pylattice

A python library for advanced lattice light-sheet image analysis

223 21 8
Electrostatics
osmolytes

This code attempts to predict the influence of osmolytes on protein stability

214 1 4
NilaiVemula
pycellfit

pycellfit: an open-source Python implementation of the CellFIT method of inferring cellular forces developed by Brodland et al.

204 1 2
bowman-lab
enspara

Tools for ensemble modeling

122 37 16
s-brahmachari
chromdyn

chromatin dynamics simulations

77 0 1
vvoelz
hpsandbox

a package of Python modules and example scripts for experimenting with the two-dimensional HP lattice model of Dill and Chan.

68 9 4
    • Data from PyPI, GitHub, ClickHouse, and BigQuery