Search Packages

gget

🧬 gget enables efficient querying of genomic reference databases

datasus-dbc

Decompress DATASUS's dbc files into dbf files in python.

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

akrup

AKRUP: ancestral karyotype reconstruction universal pipeline

moose-classifier

Alignment based taxonomic classifier

primerserver2

PrimerServer2: a high-throughput primer design and specificity-checking platform

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

genome-collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

spestimator

A tool to predict bacterial species from fasta files using RefSeq 16S.

hpcblast

No description available

blastmining

Mining NCBI BLAST output

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

emirpred

EmiRPred: A computational approach to predict exosomal and non-exosomal miRNA

transfacpred

A method to predict the transcription factors using protein sequences.

mirnablast

Use mature query miRNA sequences to BLAST the genome, fold the flanking sequences of the subjects to find possible homologous miRNA locus