Search Packages

pybv

A lightweight I/O utility for the BrainVision data format, written in Python.

brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

bluecellulab

Biologically detailed neural network simulations and analysis API

neurite

Neural networks toolbox focused on medical image analysis

siibra

Software interfaces for interacting with brain atlases - Python client

mne-lsl

A framework for real-time brain signal streaming with MNE-Python.

brainreg

Automated 3D brain registration with support for multiple species and atlases.

bg-atlasapi

A Python interface to access neuroanatomical atlases

fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

flybrains

Transforms for navis that enable mapping between different Drosophila template brains.

neurodamus

A BBP Simulation Control application for NEURON

nigsp

A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.

mindm

Python library for interacting with local installed MindManager(tm) on Windows and MacOS platform.

deepparcellation

DeepParcellation: deep learning for robust brain MRI parcellation of elderly East Asians

brayns

Brayns Python API

brainseg-containers

wrapper for brain segmentation tools

mindm-mcp

MindManager MCP Server for Automation and Integration on Win + macOS

freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

cvasl

A package for analysis of MRI

brainreg-napari

Multi-atlas whole-brain microscopy registration

esi-syncopy

A toolkit for user-friendly large-scale electrophysiology data analysis. Syncopy is compatible with the Matlab toolbox FieldTrip.

pyllusion

A Parametric Framework to Generate Visual Illusions using Python

mrqa

rQA suite of tools offering automatic evaluation of protocol compliance