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inscopix
isx

Python API for interacting with Inscopix data.

5K 12 3
NiRuff
vineseg

"ViNe-Seg: A deep-learning tool for semi-automatic neural soma segmentation and subsequent analysis in a user-friendly interface"

2K 1 0
Aharoni-Lab
mio

miniscope I/O sdk

1K 11 3
oist
optinist

Calcium Imaging Pipeline Tool

997 48 15
Sun-Lab-NBB
cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

826 0 0
kushalkolar
mesmerize

Calcium imaging analysis platform

548 62 13
neuroinformatics-unit
derotation

Derotate images acquired via multiphoton calcium imaging

517 17 3
nel-lab
mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

411 69 19
neuroinformatics-unit
photon-mosaic

Automating calcium imaging analysis

200 20 4
hochbaumGroup
hnccorr

HNCcorr algorithm for neuron identification in calcium imaging datasets.

188 11 3
handejong
fipster

Fiber photometry analysis tools used by Fipster.

92 2 0
SainsburyWellcomeCentre
stiminterp

Photostimulation artifact removal via interpolation

82 0 0
nel-lab
lbm-mc

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

69 69 19
AllenInstitute
neuroglia

a Python machine learning library for neurophysiology data

60 36 7
aolsux
samuroi

SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.

38 17 7
nel-lab
lcp-mc

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

3 69 19