Search Packages

collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

foundation-cancer-image-biomarker

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

depalma-napari-omero

Napari user interface with connection to OMERO.

spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

pyradiomics-fix

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

pysera

PySERA – Open-Source Standardized Python Library for Automated, Scalable, and Reproducible Handcrafted and Deep Radiomics

mediml

Python Open-source package for medical images processing and radiomics features extraction.

mouselungseg

YoloV8 model for the segmentation of the lungs in mice CT scans.

collageradiomicstypes

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

pyradiomics-bhklab

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

pyradiomics-cuda

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

topology-radiomics

Topology Radiomics by INVENT and BRIC lab

mousetumortrack

Tracking tumor nodules in mice CT scans.

collageradiomics-types

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

collageradiomics-core

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

collageradiomicscli

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.