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moltemplate

A general cross-platform text-based molecule builder for LAMMPS

coby

COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3

torchmd

End-To-End Molecular Dynamics (MD) Engine using PyTorch

smc-lammps

Simulate DNA loop extrusion by SMCs using LAMMPS

pycgtool

Generate coarse-grained molecular dynamics models from atomistic trajectories.

cg-openmm

Tools to build coarse grained models and perform simulations with OpenMM