Search Packages

riptide

Reaction Inclusion by Parsimony and Transcript Distribution

micom

Microbial community modeling based on cobrapy.

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

modelseedpy

Python package for building and analyzing models using ModelSEED

corda

Genome-scale model construction with CORDA

miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

modelseedpy-freiburgermsu

Python package for building and analyzing models using ModelSEED

findcpcore

findCP core package

ssbio

A Python framework for structural systems biology

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

contrabass

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.