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mjenior
riptide

Reaction Inclusion by Parsimony and Transcript Distribution

8K 13 7
micom-dev
micom

Microbial community modeling based on cobrapy.

4K 127 23
klamt-lab
straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

988 50 7
biosimulators
biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

920 2 0
ModelSEED
modelseedpy

Python package for building and analyzing models using ModelSEED

880 27 20
cdiener
corda

Genome-scale model construction with CORDA

626 25 8
MetExplore
miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

613 12 2
BeeAnka
efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

607 6 1
ModelSEED
modelseedpy-freiburgermsu

Python package for building and analyzing models using ModelSEED

579 27 20
findCP
findcpcore

findCP core package

520 1 0
SBRG
ssbio

A Python framework for structural systems biology

368 109 30
findCP
findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

357 3 0
openCONTRABASS
contrabass

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

191 3 1
biosustain
multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.

164 9 3
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