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fbergmann
python-libsedml

SED-ML library based on libSBML

20K 9 13
NuML
python-libnuml

Numerical Markup Language

10K 5 8
biosimulators
biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

9K 4 6
SED-ML
kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

3K 12 0
biosimulators
biosimulators-amici

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 3 1
biosimulators
biosimulators-pysces

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 2 0
NuML
tenuml

Numerical Markup Language

765 5 8
biosimulators
biosimulators-boolnet

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

762 0 0
aaurelions
combicode

📦 A CLI tool to combine a project's codebase into a single file for LLM context.

646 35 1
biosimulators
biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

630 0 0
biosimulators
biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

627 1 0
maurosilber
biomodels

Python library to download and cache models from BioModels

591 2 0
biosimulators
biosimulators-xpp

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

576 0 1
biosimulators
biosimulators-masspy

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

514 1 0
biosimulators
biosimulators-opencor

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container

498 0 1
biosimulators
biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

381 0 0
biosimulations
biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

369 0 0
biosimulations
biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

267 1 0
biosimulators
biosimulators-rbapy

BioSimulators-compliant command-line interface to the RBApy simulation program.

227 0 0