Search Packages

efel

Electrophys Feature Extraction Library

brian2

Brian is a free, open source simulator for spiking neural networks.

bluepyopt

Blue Brain Python Optimisation Library

bluepyefe

BluePyEfe: Blue Brain Python E-feature extraction

neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

pointprocess

A C++ Library for Point Process Analysis

hypercube-hopfield

Python bindings for HypercubeHopfield: modern Hopfield associative memory on hypercube graphs

ratinabox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

ngclearn

NGC-Learn: Computational Neuroscience Simulation and NeuroAI Design in Python

driada

Population and element-level analysis of neuronal computations

brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

cleosim

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

openretina

Open source retina model architectures and training setups

neurotune

A Python library for optimising neuronal models

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

tklfp

Lightweight package for computing the kernel LFP approximation from Teleńczuk et al., 2020

wslfp

Weighted Sum Local Field Potentials - Implementation of the proxy method for point neurons from Mazzoni, Lindén et al., 2015

foveatorch

Differentiable foveated vision for Deep Learning methods

sim2bids

App to preprocess and convert simulation data

neurosig-analyseur

analyseur is a module for analyzing (potentially) myriad models developed (or involved) in Dr. Benoît Girard’s lab

esi-syncopy

A toolkit for user-friendly large-scale electrophysiology data analysis. Syncopy is compatible with the Matlab toolbox FieldTrip.

pyorganoid

A Python package for the simulation of organoids for the purpose of studying Organoid Intelligence (OI) and Organoid Learning (OL).

functional-connectivity

Sensing functional connectivity in the brain, in Python