Search Packages

edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

cloud-volume

Read and write Neuroglancer datasets programmatically.

kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

fpzip

Cython bindings for fpzip, a floating point image compression algorithm.

skeletor

Extraction of 3D skeletons from meshes.

caveclient

This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.

zmesh

Marching Cubes & Mesh Simplification on multi-label 3D images.

grandiso

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

compresso

Compresso: Efficient Compression of Segmentation Data For Connectomics

igneous-pipeline

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

connectomics

Common repository for connectomics-related libraries.

annotationframeworkclient

This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.

sofima

Scalable Optical Flow-based Image Montaging and Alignment

catpy

Python client for the CATMAID API

diluvian

Flood filling networks for segmenting electron microscopy of neural tissue

cits

Python package for CITS algorithm: Causal inference from time series data

neuropull

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.

morphvista

A package for managing multilayer morphology data