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seung-lab
edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

75K 264 42
seung-lab
cloud-volume

Read and write Neuroglancer datasets programmatically.

32K 171 53
seung-lab
kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

29K 201 29
seung-lab
fpzip

Cython bindings for fpzip, a floating point image compression algorithm.

20K 36 5
navis-org
skeletor

Extraction of 3D skeletons from meshes.

18K 256 29
CAVEconnectome
caveclient

This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.

17K 36 15
seung-lab
zmesh

Marching Cubes & Mesh Simplification on multi-label 3D images.

16K 72 9
aplbrain
grandiso

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

15K 66 10
seung-lab
compresso

Compresso: Efficient Compression of Segmentation Data For Connectomics

13K 4 1
seung-lab
igneous-pipeline

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

3K 67 24
google-research
connectomics

Common repository for connectomics-related libraries.

2K 53 14
seung-lab
annotationframeworkclient

This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.

887 36 15
google-research
sofima

Scalable Optical Flow-based Image Montaging and Alignment

808 95 20
catmaid
catpy

Python client for the CATMAID API

291 4 3
aschampion
diluvian

Flood filling networks for segmenting electron microscopy of neural tissue

263 25 13
biswasr
cits

Python package for CITS algorithm: Causal inference from time series data

262 2 1
neurodata
neuropull

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.

137 2 0
bdpedigo
morphvista

A package for managing multilayer morphology data

73 0 0
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