Search Packages

pycsp3

A Python Library for modeling combinatorial constrained problems

cbmpy

CBMPy: https://systemsbioinformatics.github.io/cbmpy/ is a platform for constraint based modelling. It implements popular FBA analyses, model editing and supports the latest SBML3FBC standards.

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

optlang-enumerator

Module for enumerating minimal cut sets

ssbio

A Python framework for structural systems biology

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

gba

Growth Balance Analysis for Python

efmtool-link

Exposes various efmtool functionality in Python.

pipegem

This is a package for visualizing and analyzing multiple metabolic models. It also allow users to integrate omic data, metabolic tasks, and medium data with genome-scale metabolic models (GEMs).

cebpostagger

Rule-Based Cebuano POS Tagger using Constraint-Based Grammar