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common-workflow-language
cwltool

Common Workflow Language reference implementation

346K 371 241
common-workflow-language
cwl-utils

Python utilities for CWL

252K 42 25
ResearchObject
rocrate

Python library for RO-Crate

240K 81 35
common-workflow-language
cwl-upgrader

Upgrade CWL syntax to a newer version

228K 7 4
common-workflow-language
cwltest

Framework for testing CWL tools and workflows

108K 20 18
DataBiosphere
toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

32K 929 244
workflowhub-eu
galaxy2cwl

Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.

22K 6 6
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

13K 72 28
rabix
cwlformat

A very opinionated code formatter for CWL

6K 10 4
common-workflow-language
cwlprov

cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

6K 4 3
PMCC-BioinformaticsCore
janis-pipelines

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

5K 44 12
common-workflow-language
cwl-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

5K 1K 193
nfdi4plants
arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

4K 19 10
Terradue
cwl2puml

CWL Worflows processor to generate PlantUML diagrams

4K 3 0
common-workflow-language
cwlref-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

3K 1K 193
eoap
cwl2ogc

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

3K 5 2
arvados
arvados-tools

A single package to install all Arvados client tools

799 417 126
Duke-GCB
calrissian

CWL on Kubernetes

668 52 21
rabix
benten

A language server for Common Workflow Language

662 65 9
arvados
arvados-pam

Arvados PAM module

600 417 126
Barski-lab
cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

495 194 32
Terradue
cwl2click

Boostrap a Python CLI using click from a CWL CommandLineTool

285 4 1
nlesc
scriptcwl

Tool to generate CWL workflows

272 40 9
common-workflow-language
cwl-tes

Common workflow language reference implementation backended by a GA4GH Task Execution Service

192 19 26