Deconvolution Python Packages

hide-deconv

Repository for ECCB 2026 Poster Submission. Will be made available for reviewing after submission. For earlier access contact Dennis.k.volkl@uib.no

2K 1 0

chatspatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

2K 34 8

pyspfm

Blind sparse hemodynamic deconvolution methods for fMRI data

2K 3 6

lls-core

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

1K 14 6

deconvolawrence

Automated deconvolution of Bruker mass spectra datasets using UniDec

658 0 0

scaden

Deep Learning based cell composition analysis with Scaden.

657 90 31

pyunfold

Iterative unfolding for Python

650 31 13

flashdeconv

Fast Linear Algebra for Scalable Hybrid Deconvolution of Spatial Transcriptomics

604 15 0

napari-lattice

Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.

592 14 6

acscend

A deep learning tool for bulk RNA-seq deconvolution and Stem Cells Sub-Class prediction.

505 1 0

bafpipe

Automated deconvolution of Bruker mass spectra datasets using UniDec

351 0 0

faim-huygens

Tools to interact with SVI Huygens from Python

244 3 0

abundancematching

A Python package for subhalo abundance matching (SHAM) with scatter. It creates abundance functions and runs Peter Behroozi's fiducial deconvolution code.

226 10 2

covidxai

Implementation of explainability algorithms (layer-wise relevance propagation, local interpretable model-agnostic explanations, gradient-weighted class activation mapping) on computer vision architectures to identify and explain regions of COVID 19 pneumonia in chest X-ray and CT scans.

191 6 0