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dipy
dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

81K 819 497
pennlinc
qsiprep

Preprocessing of diffusion MRI

3K 181 62
samuelstjean
nlsam

Implementation of "Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising"

2K 25 11
pennbbl
qsiprep-container

Preprocessing of diffusion MRI

2K 181 62
oliverchampion
ivimnet

Physics-informed deep learning IVIM model

653 26 11
axiezai
pipetography

Nipype and tractography!

578 4 2
samuelstjean
autodmri

Automated characterization of noise distributions in diffusion MRI data

513 7 2
AthenaEPI
dmipy

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

353 119 38
nipreps
eddymotion

Open-source eddy-current and head-motion correction for dMRI.

296 20 18
nipreps
dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

290 74 25
lamyj
erwin

Toolbox to generate quantitative maps from MRI images

235 13 1
samuelstjean
dpr

Diffusion profile realignment - Making your along-tract analysis reliable

201 3 0
kerkelae
dkmri

Reproducible and efficient diffusion kurtosis imaging in Python.

182 2 2
kerkelae
dvoryan

Reproducible and efficient diffusion kurtosis imaging in Python.

159 2 2
DelinteNicolas
utracto

Package facilitating the tracking of sub-cortical U-Fibers

146 21 0
m-ama
pydesigner-dwi

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

126 31 8
kerkelae
disimpy

Massively parallel diffusion MR simulator

114 29 9
kerkelae
dkmri-win

Reproducible and efficient diffusion kurtosis imaging in Python.

78 2 2
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