Digital Pathology Python Packages

wsidicom

Python package for reading DICOM WSI file sets.

110K 49 10

tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile

43K 106 12

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

32K 526 109

torchstain

Stain normalization tools for histological analysis and computational pathology

30K 179 30

cucim

cuCIM - RAPIDS GPU-accelerated image processing library

22K 456 81

cucim-cu12

cuCIM - RAPIDS GPU-accelerated image processing library

18K 456 81

aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

15K 14 5

histolab

Library for Digital Pathology Image Processing

8K 456 66

opentile

Python library for reading tiles from wsi tiff-files.

5K 16 5

cellseg-models-pytorch

Encoder-Decoder Cell and Nuclei segmentation models

2K 100 5

pathopatch

PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters

2K 11 8

deepliif

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

2K 249 90

cucim-cu11

cuCIM - RAPIDS GPU-accelerated image processing library

1K 456 81

cucim-cu13

cuCIM - RAPIDS GPU-accelerated image processing library

1K 456 81