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lmcinnes
umap-learn

Uniform Manifold Approximation and Projection

6.8M 8K 864
pavlin-policar
opentsne

Extensible, parallel implementations of t-SNE

129K 2K 176
JustGlowing
minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

46K 2K 444
GAA-UAM
scikit-fda

Functional Data Analysis Python package

43K 344 63
cvxgrp
pymde

Minimum-distortion embedding with PyTorch

19K 585 30
trevorprater
pymorton

A lightweight and efficient Python Morton encoder with support for geo-hashing

11K 117 22
KrishnaswamyLab
phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

9K 546 82
dpeerlab
palantir

Single cell trajectory detection

6K 309 61
TorchDR
torchdr

TorchDR - PyTorch Dimensionality Reduction

4K 202 14
xarray-contrib
xeofs

Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis

3K 135 23
nla-group
fabba

An efficient symbolic time series approximation with ABBA.

3K 51 12
beringresearch
ivis

Dimensionality reduction in very large datasets using Siamese Networks

2K 343 43
bkahan
sphereql

Spherical coordinate knowledge representation — fast semantic search, visualization, and analysis

2K 1 0
Advestis
adnmtf

Non-Negative Matrix and Tensor Factorizations

1K 3 1
iabs-neuro
driada

Population and element-level analysis of neuronal computations

1K 10 0
davisidarta
topometry

Tools for single-cell geometric analysis, clustering and visualization.

1K 106 5
mcsorkun
chemplot

A python package for chemical space visualization.

1K 152 35
berenslab
tsimcne

Visualization tool for unsupervised image visualization (ICLR 2023)

961 115 14
FindHotel
ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

941 36 2
ContextLab
timecorr

Estimate dynamic high-order correlations in multivariate timeseries data

747 42 12
ventus550
somu

A simple high-performance implementation of the Self-Organizing Map (SOM) algorithm in Rust, exposed as a Python module.

731 1 0
jgeofil
mycorrhiza

Mycorrhiza population assignment tools.

727 7 2
mpmatthe
evomap

A Python Toolbox for Mapping Evolving Relationship Data

684 24 4
thieu1995
mafese

Feature Selection using Metaheuristics Made Easy: Open Source MAFESE Library in Python

656 95 26
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