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pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

alcoholic-tfe22540

Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patients using dMRI data.

connectomemapper

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

nifreeze

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

pydesigner-dwi

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

elikopy

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.