Search Packages

meds-reader

A high-performance database and Python reader interface for MEDS datasets

medpython

Medial EarlySign Python

ehrdata

A datastructure for EHR data

ehrapy

Electronic Health Record Analysis with Python.

healthchain

Python SDK for healthcare AI: connect models to live EHR systems, skip the integration tax 💫 🏥

pat2vec

A comprehensive Python package for healthcare data engineering, designed to extract, transform, and feature engineer patient data from CogStack-based electronic health record (EHR) datalakes. It provides tools for cohort building, batch data processing, clinical note analysis, and creating machine learning-ready datasets.

faker-healthcare-provider

Generate realistic healthcare test data in 6 languages (en, es, pt, zh, fr, de): 150+ diseases with correlated ICD-10 codes, medications, symptoms, and more

cycquery

A tool to query relational EHR databases

medpython-etl

Medial EarlySign ETL Library

fhirpack

FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation of FHIR and EHR data using PANDAS, an ETL philosophy and a functional syntax. It was initially developed at the IKIM and HDDBS in Germany. Read more at https://zenodo.org/record/8006589

lemonpie

An open source deep learning library for Electronic Health Record (EHR) data

cleandat

Python functions to facilitate the pre-processing of data for ML tasks in a clinical context

chartfold

Patient-facing tool for consolidating personal health data from multiple EHR systems into a single SQLite database

mai-dx

MAI-DxO - Pytorch

ehrax

io+hdf5+lazy-loading+processing-pipelines for EHRs and generic PyTrees for JAX friendly tasks, mainly ML

yaib

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

openemr-agent

The most popular open source electronic health records and medical practice management solution.