Search Packages

rosettasciio

Python library for reading and writing scientific data format

cloud-volume

Read and write Neuroglancer datasets programmatically.

axondeepseg

Axon/Myelin segmentation using Deep Learning

scikit-ued

Collection of algorithms and routines for (ultrafast) electron diffraction and scattering

libertem

Open pixelated STEM framework

please

PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.

atomai

Deep and Machine Learning for Microscopy

particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

stemtool

A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality

traceon

Solver and tracer for electrostatic problems

stemia

Scripts and Tools for Electron Microscopy Image Analysis.

multimodal-fusion

Multi-Modal Electron Microscopy Data Fusion

libertem-blobfinder

LiberTEM correlation and refinement library

sofima

Scalable Optical Flow-based Image Montaging and Alignment

mapfusion

Multi-Modal Electron Microscopy Data Fusion for Spectral Maps

empanada-napari

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

instamatic

Python program for automated electron diffraction data collection

etspy

Suite of tools for processing and reconstruction of electron tomography data

imagedataextractor

ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.

particlespy

A package to perform particle segmentation and analysis

focustools

Python utilities for the FOCUS package

elektronn3

Utilities for 3D CNNs in PyTorch

libertem-holo

Electron holography reconstruction and preprocessing routines

empanada-dl

Panoptic segmentation algorithms for 2D and 3D electron microscopy images