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openbraininstitute
efel

Electrophys Feature Extraction Library

98K 9 0
SpikeInterface
probeinterface

Python package to handle probe layout, geometry and wiring to device.

45K 79 47
SpikeInterface
spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

34K 780 261
cortex-lab
phylib

Lightweight electrophysiological data analysis library

27K 16 29
int-brain-lab
mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

27K 46 10
NeuralEnsemble
elephant

Elephant is the Electrophysiology Analysis Toolkit

25K 239 96
openbraininstitute
bluepyopt

Blue Brain Python Optimisation Library

15K 8 0
Npix-routines
npyx

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

15K 146 32
openbraininstitute
bluepyefe

BluePyEfe: Blue Brain Python E-feature extraction

7K 4 0
MouseLand
kilosort

Fast spike sorting with drift correction

7K 608 286
swharden
pyabf

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

6K 115 36
SpikeInterface
spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

5K 117 48
ZitongLu1996
neurora

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

5K 197 33
Julie-Fabre
bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

4K 229 58
VirtualBrainLab
ephys-link

A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with manipulators used in electrophysiology experiments.

3K 3 1
GWeindel
hsmm-mvpy

Repository for the hmp python package

2K 52 11
cortex-lab
phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

2K 411 185
GazzolaLab
miv-os

Analysis pipeline for electrophysiology MiV-system and simulator

2K 15 10
Eden-Kramer-Lab
spectral-connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

2K 136 47
LorenFrankLab
spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

1K 114 55
siplab-gt
cleosim

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

1K 20 1
BlueBrain
emodel-generalisation

Generalisation of electrical models of neurons with MCMC

944 5 5
JanCBrammer
biopeaks

A graphical user interface for feature extraction from heart- and breathing biosignals.

753 73 6
Zer0pa
zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

723 0 0
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