PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Search Packages

Find Python packages by name, description, GitHub topic, or filter by metrics
nolan-h-hamilton
rocco

Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling

6K 9 0
lhqing
allcools

Toolkit for single-cell DNA methylation analysis.

3K 47 22
epifluidlab
finaletoolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

3K 37 17
BroadInstitute
broad-genepy

Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

1K 21 5
hoffmangroup
segway

Application for semi-automated genomic annotation.

1K 18 8
liguowang
cpgtools

Python package to analyze DNA methylation data

923 45 13
andrewdavidsmith
pyxfr

The Transferase Python API

456 4 0
gifford-lab
deepaccess

A package for training and interpreting an ensemble of neural networks for chromatin accessibility

263 6 0
vivekbhr
sincei

A command-line and python toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data

253 7 0
meuleman
epilogos

Methods for summarizing and visualizing multi-biosample functional genomic annotations

202 47 5
dohlee
chromoformer

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

186 38 2
caleblareau
bap-atac

Bead-based single-cell atac processing

150 33 8
ngualand
prooverlap

ProOvErlap - Assessing feature proximity/overlap and testing statistical significance from genomic intervals

125 1 0
linjing-lab
mmspao

Multi-modal spatial omics integration with views and combinations.

80 0 0
    • Data from PyPI, GitHub, ClickHouse, and BigQuery