Fluorescence Python Packages | PyPI Stats

fretbursts

Burst analysis toolkit for single and multi-spot smFRET data.

4K 13 12

labellib

Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

3K 9 3

opticalmapping

Deprecated. Please use the 'optimap' package instead.

3K 17 2

rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

3K 0 0

cytoflow

Python tools for quantitative, reproducible flow cytometry analysis

2K 214 58

tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3

optimap

A toolbox for analyzing optical mapping and fluorescence imaging data.

1K 17 2

flika

An interactive image processing program for biologists written in Python.

1K 25 2

nellie

Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

1K 94 13

icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

1K 2 1

cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

826 0 0

corrct

Physically corrected projectors for X-ray induced emission CT.

817 9 3

lifefit

Analyze fluorescence lifetime and anisotropy decays.

760 9 4

papylio

Single-molecule fluorescence data extraction and analysis.

674 0 3

ifpd

An iFISH probe design pipeline, with web interface included.

549 12 6

smo

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

479 13 5

imswitch

Microscopy control

452 85 39

cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

411 2 0

hts-tools

Parsing and analysing platereader absorbance and fluorescence data.

320 0 1

calciumflexanalysis

Read and interpret calcium flux assays

264 0 0

cytoself

An image feature extractor with self-supervised learning

227 85 16

pyeem

Python library for the preprocessing, correction, deconvolution and analysis of Excitation Emission Matrices (EEMs).

188 7 1

fish-prode

iFISH Probe Design: a Python3 package to build iFISH probes.

135 12 6

birfi

Blind instrument response function identification from fluorescence decays

131 1 1