PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Search Packages

Find Python packages by name, description, GitHub topic, or filter by metrics
OpenSMFS
fretbursts

Burst analysis toolkit for single and multi-spot smFRET data.

4K 13 12
Fluorescence-Tools
labellib

Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

3K 9 3
cardiacvision
opticalmapping

Deprecated. Please use the 'optimap' package instead.

3K 17 2
MartinPdeS
rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

3K 0 0
cytoflow
cytoflow

Python tools for quantitative, reproducible flow cytometry analysis

2K 214 58
fluorescence-tools
tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3
cardiacvision
optimap

A toolbox for analyzing optical mapping and fluorescence imaging data.

1K 17 2
flika-org
flika

An interactive image processing program for biologists written in Python.

1K 25 2
aelefebv
nellie

Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

1K 94 13
cgohlke
icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

1K 2 1
Sun-Lab-NBB
cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

826 0 0
cicwi
corrct

Physically corrected projectors for X-ray induced emission CT.

817 9 3
RNA-FRETools
lifefit

Analyze fluorescence lifetime and anisotropy decays.

760 9 4
Chirlmin-Joo-lab
papylio

Single-molecule fluorescence data extraction and analysis.

674 0 3
ggirelli
ifpd

An iFISH probe design pipeline, with web interface included.

549 12 6
maurosilber
smo

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

479 13 5
kasasxav
imswitch

Microscopy control

452 85 39
landoskape
cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

411 2 0
scbirlab
hts-tools

Parsing and analysing platereader absorbance and fluorescence data.

320 0 1
lawrencecollins
calciumflexanalysis

Read and interpret calcium flux assays

264 0 0
royerlab
cytoself

An image feature extractor with self-supervised learning

227 85 16
drewmee
pyeem

Python library for the preprocessing, correction, deconvolution and analysis of Excitation Emission Matrices (EEMs).

188 7 1
ggirelli
fish-prode

iFISH Probe Design: a Python3 package to build iFISH probes.

135 12 6
VicidominiLab
birfi

Blind instrument response function identification from fluorescence decays

131 1 1
    • Data from PyPI, GitHub, ClickHouse, and BigQuery