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biosimulators
biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

920 2 0
biosimulators
biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

630 0 0
MetExplore
miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

613 12 2
cnapy-org
cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

542 65 18
draeger-lab
pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

367 14 7
RamanLab
fastsl

FastSL-py is an efficient algorithm to identify synthetic lethal gene/reaction sets in genome-scale metabolic models.

360 0 1
biosimulations
biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

267 1 0
korem-lab
pymgpipe

Python implementation of mgpipe

229 7 1
openCONTRABASS
contrabass

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

191 3 1
omicspilot
cellmetpro

Cellular Metabolic Profiler - Analyze and visualize metabolic profiles from scRNA-seq data

129 0 0
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