Search Packages

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

fastsl

FastSL-py is an efficient algorithm to identify synthetic lethal gene/reaction sets in genome-scale metabolic models.

biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

pymgpipe

Python implementation of mgpipe

contrabass

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

cellmetpro

Cellular Metabolic Profiler - Analyze and visualize metabolic profiles from scRNA-seq data