Search Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

pygenomeviz

A genome visualization python package for comparative genomics

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

barcodefinder

a toolbox for utilize organelle genomic data

genmine

GenBank Record downloader for taxonomists

cazy-webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

dnadesign

A lua package for designing DNA.

gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

ogu

a toolbox for utilize organelle genomic data

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

makura

NCBI Genome downloader

gbcrawler

GenBank complete parser

gbgb

Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank records a new and better life.

multisub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.