A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
Python client for the new OmniPath web APIs
An integrative toolkit for detecting cell type-specific regulators
Integrated workflow to predict super-enhancers and compute feature importance
