Search Packages

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

nordic

Network-Oriented Repurposing of Drugs Python Package

grnndata

Awesome GRN enhanced AnnData toolkit

regdiffusion

Gene Regulatory Networks Inference using diffusion model

netzoopy

netZooPy is a network biology package implemented in Python.

netzoopy-sponge

Python package to generate prior gene regulatory networks.

dysregnet

Inferring patient-specific regulatory alterations

normalisr

Normalisr Offers Robust Modelling of Associations Linearly In Single-cell RNA-seq

airqtl

Single-cell eQTL mapping and causal gene regulatory network inference at high efficiency and accuracy

cellnition

Analyze gene regulatory networks (GRNs) via Network Finite State Machines (NFSMs).

dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

pyscorpion

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks